Papereader by Mana.bio

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Configuration

[category.carrier]

[category.carrier.lnp]
name = "LNP"
keywords = [
    "LNP",
    "lipid NP",
    "lipid particle",
    "lipid nanoparticle",
    "lipid nano particle",
    "lipid nano-particle",
]

[category.carrier.polymeric_np]
name = "Polymeric NP"
hint = "polymer or peptide"
keywords = [
    "polymeric carrier",
    "polymeric NP",
    "polymeric particle",
    "polymeric nanoparticle",
    "polymeric nano particle",
    "polymer",
    "peptide",
]

[category.carrier.viral_vector]
keywords = ["viral vector", "AAV", "adenovirus", "adenoviral", "virus"]

[category.carrier.dendrimer]
keywords = ["dendrimer"]

[category.carrier.inorganic_np]
name = "Inorganic NP"
keywords = [
    "inorganic NP",
    "inorganic particle",
    "inorganic nanoparticle",
    "inorganic nano particle",
    "Au",
    "Ag",
]

[category.carrier.liposome]
keywords = ["liposome", "liposomal"]

[category.carrier.micelle]
keywords = ["micelle"]

[category.carrier.nano_aggregate]
keywords = ["nano aggregate"]

[category.carrier.emulsion]
keywords = ["emulsion"]

[category.carrier.magnetic_np]
name = "Magnetic NP"
keywords = [
    "magnetic NP",
    "magnetic particle",
    "magnetic nanoparticle",
    "magnetic nano particle",
]

[category.carrier.biomimetic_np]
name = "Biomimetic NP"
keywords = [
    "biomimetic NP",
    "biomimetic particle",
    "biomimetic nanoparticle",
    "biomimetic nano particle",
]

[category.payload]

[category.payload.mRNA]
keywords = ["mRNA"]

[category.payload.siRNA]
keywords = ["siRNA"]

[category.payload.crispr]
name = "CRISPR"
keywords = ["crispr", "crispr/cas9", "crispr/cas", "sgRNA"]

[category.payload.pDNA]
keywords = ["pDNA"]

[category.payload.DNA]
keywords = ["DNA"]

[category.payload.miRNA]
keywords = ["miRNA"]

[category.payload.protein]
keywords = ["protein"]

[category.payload.RNA]
keywords = ["RNA"]

[category.payload.small_molecule]
keywords = ["small molecule"]

[category.payload.circRNA]
keywords = ["circRNA"]

[category.organ]

[category.organ.liver]
keywords = ["liver", "hepatoma", "hepatic", "hepatocellular"]

[category.organ.spleen]
keywords = ["spleen"]

[category.organ.kidney]
keywords = ["kidney", "renal"]

[category.organ.lung]
keywords = ["lung", "pulmonary", "bronchial"]

[category.organ.heart]
keywords = ["heart", "aorta", "coronary artery"]

[category.organ.muscle]
keywords = ["muscle"]

[category.organ.tumor]
keywords = ["tumor"]

[category.organ.t_cell]
keywords = [
    "lymphocyte",
    "CD4",
    "CD8",
    "CD45",
    "CD3",
    "white blood cell",
    "T cell",
    "T-cell",
    "T helper cell",
    "T-helper cell",
    "T killer cell",
    "T-killer cell",
    "T lymph",
]

[category.organ.immune]
keywords = ["immune", "lymphocyte"]

[category.organ.breast]
keywords = ["breast"]

[category.organ.cartilage]
keywords = ["cartilage"]

[category.organ.nervous]
keywords = ["nervous"]

[category.organ.eye]
keywords = ["eye"]

[category.organ.gastrointestinal]
keywords = ["gastrointestinal"]

[category.organ.prostate]
keywords = ["prostate", "prostatic"]

[category.organ.reproductive]
keywords = ["reproductive", "ovary", "testis", "testicular"]

[category.organ.skin]
keywords = ["skin", "topical", "topically", "dermal", "intradermal"]

[category.organ.blood_vessels]
keywords = ["vessel"]

[category.organ.lymph]
keywords = ["lymph"]

[category.administration_route]

[category.administration_route.iv]
name = "IV"
keywords = ["IV", "I.V", "intravenously", "intravenous"]

[category.administration_route.ip]
name = "IP"
keywords = ["IP", "I.P", "intraperitoneally", "intraperitoneal"]

[category.administration_route.im]
name = "IM"
keywords = ["IM", "I.M", "intramuscularly", "intramuscular"]

[category.administration_route.sc]
name = "SC"
keywords = ["SC", "S.C", "subcutaneously", "subcutaneous"]

[category.administration_route.topical]
keywords = ["topical", "topically", "dermal", "intradermal"]

[category.administration_route.intraocular]
keywords = ["intraocular", "intraocularly"]

[category.administration_route.intranasal]
keywords = ["intranasal", "intranasally"]

[category.administration_route.inhalation]
keywords = ["inhalation"]

[category.administration_route.oral]
keywords = ["oral", "orally"]

[category.administration_route.intracerebral]
keywords = ["intracerebral", "intracerebrally"]

[category.expression_measurement_time]

[category.expression_measurement_time.hour]
keywords = ["hour", "h", "hr"]

[category.n_to_p_ratio]
name = "N:P ratio"
keywords = ["N:P", "N/P", "w:w", "w/w", "wt:wt", "wt/wt"]

[category.modification]

[category.modification.modification]
keywords = ["modification", "modified"]

[category.modification.chitosan]
keywords = ["chitosan"]

[category.modification.ester]
keywords = ["ester"]

[category.modification.methylation]
keywords = ["methylation"]

[category.modification.ligand]
keywords = ["ligand"]

[category.modification.antibody]
keywords = ["antibody"]

[category.modification.moiety]
keywords = ["moiety"]

[category.modification.peptide]
keywords = ["peptide"]

[category.modification.protein_corona]
keywords = ["protein corona"]

[category.physicochemical_property]

[category.physicochemical_property.group]

[category.physicochemical_property.size]

[category.physicochemical_property.zeta]

[category.physicochemical_property.charge]

[category.physicochemical_property.nm]
name = "nm"

[category.physicochemical_property.pdi]
name = "PDI"

[category.expression]
keywords = [
    "luciferase",
    "IVIS",
    "in vivo",
    "liver",
    "spleen",
    "RLU",
    "luminescence",
    "fluorescence",
]

[category.peg]
name = "PEG"
keywords = [
    'PEG',
    'poly',
    'polymer',
    'polyethylene',
    'ethylene',
    'glycol',
    'pegylated',
    'DMG',
    'C10',
    'C13',
    'C14',
    'C18',
    'PEG1000',
    'PEG-1000',
    'PEG2000',
    'PEG-2000',
    'DMPEPEG-lipid',
    'DSPE',
    'DMA',
]

[category.cell_analysis]
keywords = [
    "FACS",
    "flow cytometry",
    "cell sorting",
    "cell separation",
    "cell purification",
    "cell sorter",
]

[category.external_stimuli]
keywords = ["external stimuli", "electric shock", "electroporation"]

[category.most_common_words]

[category.formulation_ratio]

[category.toxicity]

[category.study_type]

[category.proteins]

[stopwords]
words = [
    "experiment",
    "translation",
    "figure",
    "activity",
    "sample",
    "samples",
    "fig",
    "al.",
]

This controls the analysis of the paper.

Analysis name

An analysis name useful for future reference.

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